GHIGLIONE Jean-François (CNRS, FRANCE)

Ghiglione

First Name: Jean-François

Name: Ghiglione

Position: Research director

Email: ghiglione@obs-banyuls.fr

Institute / University / Company: CNRS

Research Unit: Laboratoire d’Océanographie Microbienne UMR 7621

Address (city, state): 1 Aveneue Fabre – 66650 Banyuls sur mer

Country: France

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy: -plastic pollution
-marine bacteria
-biodegradation
-OMICs
-toxicity

Main kinds of contaminant(s) of interest: plastics: polymers and additives

Main kinds of microorganisms of interest: bacteria

Main kinds of ecosystems of interest: marine

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

-Jacquin J, Cheng J, Odobel C, Pandin C, Conan P, Pujo-Pay M, Barbe V, Meistertzheim AL, Ghiglione JF. Microbial ecotoxicology of marine plastic debris: a review on colonization and biodegradation by the ‘plastisphere’ Frontiers in microbiology (IF 4.52) 10:865.
-Lambert S, Tragin M, Lozano JC, Ghiglione JF, Vaulot D, Bouget FY, Galand P. (2019) Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations.ISME Journal (IF 9.52) 13(2):388-401.
-Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Forcioli D, Furla P, Galand P, Ghiglione JF et al. (2019). The Tara Pacific expedition: a pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean. Plos Biology (IF 8.38), 17(9):e3000483.
-Dussud C, Meistertzheim AL, Conan P, Pujo-Pay M, George M, Fabre P, Coudane J, Higgs P, Elineau A, Pedrotti ML, Gorsky G, Ghiglione JF (2018) Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters. Environmental Pollution (IF 5.09) 236: 807-816.
-Chapron L, Peru E, Engler A, Ghiglione JF, Meistertzheim AL, Pruski AM, Purser A, Vétion G, Galand PE, Lartaud F (2018) Macro-and microplastics affect cold-water corals growth, feeding and behaviour. Scientific reports (IF 4.61) 8:15299.

BRIAND Jean-François (University of Toulon, FRANCE)

BRIAND

First Name: Jean-François

Name: Briand

Position: Associate-professor

Email: briand@univ-tln.fr

Institute / University / Company: University of Toulon

Research Unit: MAPIEM

Address (city, state): CS 60584 83041 TOULON CEDEX 9

Country: France

Please give 5 key-words showing your research / interest in Microbial Ecotoxicology:

  • marine biofilm
  • community structure
  • environmental drivers
  • artificial surfaces
  • multiomics

Main kinds of contaminant(s) of interest:

  • Metals

Main kinds of microorganisms of interest:

  • prokaryotes
  • diatoms

Main kinds of ecosystems of interest:

  • marine

Do you give courses on Microbial Ecotoxicology ?: YES

If yes, please tell us more about the courses (University, course level,website,etc): University of Toulon, Master of marine sciences (IPA) / http://master-sdm.univ-tln.fr/master-sdm-parcours-ipa/

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

Catao E., Pollet T., Misson B., Garnier C., Ghiglione J.-F., Barry-Martinet R., Maintenay M., Bressy C. & Briand J.-F. (2019). Shear stress as a major driver of marine biofilm communities. Front. Microbiol 10:1768

Coclet C., Garnier C., Durrieu G., Omanović D., D’onofrio S., Le Poupon C., Mullot J.-U., Briand J.-F. & Misson B. (2019). Changes in bacterioplankton communities resulting from direct and indirect interactions with trace metal gradients in an urbanized marine coastal area. Front. Microbiol. 10:257

Briand J.-F., Pochon X., Wood S.A., Bressy C., Garnier C., Réhel K., Urvois F., Culioli G. & Zaiko A. (2018). Metabarcoding and metabolomics offer complementarity in deciphering marine eukaryotic biofouling community shifts. Biofouling 34:657-672

Briand J.-F., Barani A., Garnier C., Réhel K., Urvois F., Le Poupon C., Bouchez A., Debroas D. & Bressy C. (2017). Spatio-temporal variations of marine biofilm communities colonizing artificial substrata including antifouling coatings in contrasted coastal environments. Microb. Ecol. 74:585-598

Camps M., Barani A., Gregory G., Bouchez A., Le Berre B., Bressy C., Blache Y. & Briand J.-F. (2014). Antifouling coatings influence both abundance and community structure of their colonizing biofilms: a case study in the North-Western Mediterranean Sea. Appl. Environ. Microbiol. 80:4821-4831

EcotoxicoMic Newsletter #9 (March 2020)

The 9th Newsletter is specifically dedicated to the 2nd EcotoxicoMic International Conference that will be organized in Montpellier (France) from the 6 to 9 October 2020. 

Considering the severe COVID-19 outbreak, the deadlines for the submission and the registration to the conference might be delayed. However, when possible, we encourage you to submit your abstracts in early April to allow us to start the review process.

Please respect the barrier gestures to stop the viral pandemic and take care of your health.

EcotoxicoMic NewsLetter 9 – March 2020

NL9

SURESH KUMAR RS (Arba Minch University, ETHIOPIA)

Suresh_photo

First Name:  R.S.

Name: Suresh kumar

Position: Assistant Professor in toxicology

Email: suresh874u@gmail.com

Institute / University / Company: Arba Minch University

Research Unit: Environment Toxicology

Address (city, state): Arba Minch University, post box no- 21, Arba Minch, SNNPR

Country: Ethiopia

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • Bio accumulation
  • Microbial degradation
  • Rhizoremediation
  • Aquatic ecotoxicology
  • Microbial forensics

Main kinds of contaminant(s) of interest:

  • Pesticides
  • Heavy metals
  • Nanoparticles

Main kinds of microorganisms of interest:

  • Rhizobacteria
  • Pseudomonas sps

Main kinds of ecosystems of interest:

  • Aquatic ecosystem
  • Paddy field ecosystem

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

BONNOT Kévin (INRAE/ADEME, FRANCE)

Bonnot

First Name: Kévin

Name: Bonnot

Position: PhD Student

Email: bonnotkv@gmail.com

Institute / University / Company: INRAE / ADEME

Research Unit: ECOSYS Grignon / LBE Narbonne

Address (city, state): 1 Avenue lucien brétignières

Country: France

Please give 5 key-words showing your research / interest in Microbial Ecotoxicology:

  • Biotransformation
  • PPCP
  • QSAR
  • Pharmaceuticals
  • Ecotoxicology

Main kinds of contaminant(s) of interest:

Pharmaceuticals and personnal care products

Main kinds of microorganisms of interest:

  • Bacterial strains
  • Fungi
  • Micro-algae

Main kinds of ecosystems of interest:

  • Aquatic
  • Solid waste
  • Soils
  • Artificial media

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

Not yet

FOURRIER Camille (IMBE, Aix-Marseille Université, FRANCE)

First Name: Camille

Name: Fourrier

Position: PhD student

Email: camille.fourrier@imbe.fr

Institute / University / Company: Aix-Marseille Université

Research Unit: IMBE

Address (city, state): Faculté des Sciences de Saint Jérôme, 52 Avenue Escadrille Normandie Niémen, Case 441, 13013 Marseille

Country: France

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • mine wastes
  • microbial ecology
  • enzyme activities
  • soil ecology
  • red muds

Main kinds of contaminant(s) of interest:

  • heavy metals

Main kinds of microorganisms of interest:

  • bacteria
  • fungi

Main kinds of ecosystems of interest:

  • soil

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5): No article yet

LOZANO Clément (Laboratoire océanographique de Banyuls sur Mer, FANCE & University of Stirling, UK)

First Name: Clément

Name: Lozano

Position: Ph.D. Student

Email: lozano.clement@gmail.com

Institute / University / Company: Laboratoire océanographique de Banyuls sur Mer & University of Stirling

Research Unit: Laboratoire de biodiversité et biotechnologies microbiennes (Sorbonne Université) / Biological and environmental Sciences (Stirling University)

Address (city, state): Avenue Pierre Fabre

Country: France & UK

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • Proteomic
  • Ecotoxicology
  • UV-filters
  • Metaproteomic

Main kinds of contaminant(s) of interest:

Personal car products

Main kinds of microorganisms of interest:

Environmentaly relevant bacteria

Main kinds of ecosystems of interest:

Marine

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

BELLEC Laure (Université de Bordeaux, Arcachon, FRANCE)

First Name: laure

Name: Bellec

Position: maître de conférence

Email: laure.bellec@u-bordeaux.fr

Institute / University / Company: Université de Bordeaux

Research Unit: UMR EPOC équipe Ecotoxicologie aquatique

Address (city, state): Sation marine d’arcachon- place du Dr Peyneau – 33120 Arcachon

Country: France

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • microbial diversity
  • microbial ecology
  • microbiome
  • bacteria
  • virus

Main kinds of contaminant(s) of interest:

  • pesticide

Main kinds of microorganisms of interest:

  • aquaculture fish
  • free-living marine nematode

Main kinds of ecosystems of interest:

  • marine or aquatic

Do you give courses on Microbial Ecotoxicology ?: NO

Most relevant articles in the field of Microbial Ecotoxicology (max.5): Not yet !!!!
But in microbiology:

  • BELLEC, Laure, BONAVITA, Marie-Anne Cambon, HOURDEZ, Stéphane, et al. Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. Scientific reports, 2019, vol. 9, no 1, p. 7019.
  • BELLEC, Laure, CAMBON BONAVITA, Marie-Anne, CUEFF-GAUCHARD, Valerie, et al. A nematode of the Mid-Atlantic Ridge hydrothermal vents harbors a possible symbiotic relationship. Frontiers in microbiology, 2018, vol. 9, p. 2246.
  • BELLEC, Laure, CLERISSI, Camille, EDERN, Roseline, et al. Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC evolutionary biology, 2014, vol. 14, no 1, p. 59.
  • BELLEC, Laure, GRIMSLEY, Nigel, MOREAU, Hervé, et al. Phylogenetic analysis of new Prasinoviruses (Phycodnaviridae) that infect the green unicellular algae Ostreococcus, Bathycoccus and Micromonas. Environmental microbiology reports, 2009, vol. 1, no 2, p. 114-123.
  • BELLEC, Laure, GRIMSLEY, Nigel, DERELLE, Evelyne, et al. Abundance, spatial distribution and genetic diversity of Ostreococcus tauri viruses in two different environments. Environmental microbiology reports, 2010, vol. 2, no 2, p. 313-321.

DUDHAGARA Pravin (Veer Narmad South Gujarat University, Surat, INDIA)

Pravin Dudhagara

First Name: Dr. Pravin

Name: Dudhagara

Position: Assistant Professor

Email: dudhagarapr@gmail.com

Institute / University / Company: Department of Biosciences, Veer Narmad South Gujarat University, Surat

Research Unit: Bioinformatics and Microbiome

Address (city, state): Surat, Gujarat State, India

Country: India

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • Metagenomics and microbiome analysis
  • Stimulated microbial ecology study
  • Antibiotics resistant in the environment
  • Ecotoxicology investigation
  • Extreme biosphere ecology

Main kinds of contaminant(s) of interest:

  • Pesticides
  • Dye and pigments
  • PAHs
  • Plastic
  • Hydrocarbon

Main kinds of microorganisms of interest:

  • Extremophiles
  • Actinobacteria
  • Fungi
  • Uncultured microbes

Main kinds of ecosystems of interest:

  • Polluted sites
  • Marine
  • Hot springs
  • Desert
  • Host

    Do you give courses on Microbial Ecotoxicology ?: NO

    Most relevant articles in the field of Microbial Ecotoxicology (max.5):

1. Bhavsar, S., Dudhagara, P., & Tank, S. (2018). R software package based statistical optimization of process components to simultaneously enhance the bacterial growth, laccase production and textile dye decolorization with cytotoxicity study. PloS one, 13(5), e0195795.
2. Thapa, R., Bhagat, C., Shrestha, P., Awal, S., & Dudhagara, P. (2017). Enzyme-mediated formulation of stable elliptical silver nanoparticles tested against clinical pathogens and MDR bacteria and development of antimicrobial surgical thread. Annals of clinical microbiology and antimicrobials, 16(1), 39.
3.Dudhagara, P., Kothari, R., Ghelani, A., Rank, J., & Patel, R. (2017). Prospects and Progress in Extreme Biosphere Microbiome. In Understanding Host-Microbiome Interactions-An Omics Approach (pp. 55-67). Springer, Singapore.
4. Bhagat, C., Dudhagara, P., & Tank, S. (2018). Trends, application and future prospectives of microbial carbonic anhydrase mediated carbonation process for CCUS. Journal of applied microbiology, 124(2), 316-335.
5. Mangrola, A. V., Dudhagara, P. R., Koringa, P. G., Joshi, C. G., & Patel, R. K. (2018). Metagenomic microbial community profiling of Unnai hot spring by Ion-Torrent based shotgun sequencing. Microbiology, 87(1), 143-146.

DUDHAGARA Dushyant (Bhakta Kavi Narsinh Mehta University, INDIA)

Dr Dudhagara

First Name: Dushyant

Name: Dudhagara

Position: Junior Assistant Professor

Email: dushyant.373@gmail.com

Institute / University / Company: Bhakta Kavi Narsinh Mehta University

Research Unit: Department of Life Sciences

Address (city, state): Bilkha Road, Khadiya, Junagadh

Country: India

Please give 5 key-words showing your research / interest in Microbial Ecotoxicolgy:

  • Microbial ecology
  • Bioremediation of organic pollutants
  • Ecological Risk categorization of pollutants
  • Marine microbial community
  • Distribution of pollutants using Multivariate analysis
  • Pollution source identification

Main kinds of contaminant(s) of interest:

  • Polycyclic aromatic hydrocarbons
  • Plastics
  • Pesticides
  • Industrial waste water

Main kinds of microorganisms of interest:

  • Bacteria
  • Actinomycetes
  • Archaea

Main kinds of ecosystems of interest:

  • Marine ecosystem
  • Halophytes associated microbial ecosystem
  • Terrestrial ecosystem

Do you give courses on Microbial Ecotoxicology ?: YES
If yes, please tell us more about the courses (University, course level,website,etc): National seminar on statistics for biological and pharmaceutical sciences sponsored by Gujarat Council on science and technology, VVP Engineering Collage, Rajkot, India.

Most relevant articles in the field of Microbial Ecotoxicology (max.5):

1. Dushyant R. Dudhagara, Rahul K. Rajpara, Jwalant K. Bhatt, Haren B. Gosai, Bhumi K. Sachaniya, Bharti P. Dave, Distribution, sources and ecological risk assessment of PAHs in historically contaminated surface sediments at Bhavnagar coast, Gujarat, India
2. Dushyant R. Dudhagara, Rahul K. Rajpara, Jwalant K. Bhatt, Haren B. Gosai, Bharti P. Dave, Bioengineering for polycyclic aromatic hydrocarbon degradation by Mycobacterium litorale: Statistical and artificial neural network (ANN) approach
3. Rahul K. Rajpara, Dushyant R. Dudhagara, Jwalant K. Bhatt, Haren B. Gosai, Bharti P. Dave, Polycyclic aromatic hydrocarbons (PAHs) at the Gulf of Kutch, Gujarat, India: Occurrence, source apportionment, and toxicity of PAHs as an emerging issue.
4. Haren B. Gosai . Bhumi K. Sachaniya . Dushyant R. Dudhagara . Rahul K. Rajpara . Bharti P. Dave, Concentrations, input prediction and probabilistic biological risk assessment of polycyclic aromatic hydrocarbons (PAHs) along Gujarat coastline.
5. Haren B. Gosai, Bhumi K. Sachaniya, Dushyant R. Dudhagara, Haresh Z. Panseriya, Bharti P. Dave, Bioengineering for multiple PAHs degradation using process centric and data centric approaches